First, the seal. The seal itself is in the little cover/shroud that goes over/around the imput shaft itself, which is easily removed with the three allen screws that hold it to the front of the transmission casing. That is a piece of cake once the transmission is out and bellhousing off. I expect you will also need to source or make a new gasket that goes between that housing and the front of the trans. case...if there is/ever was one.
As for the bearing... I don't know how much play is acceptable... But, you might check the amount of play in various gears. I would think that there would naturally be more play in neutral, which is probably where it was when you installed it. With a puller of some sort, I think you could indeed pull the input shaft without taking anything else apart...though, at least one or two of the selecter rods would have to come out along with their shifter forks. And, you'll be getting into them 3rd/4th shift sincros and dogs and stuff....
Personally, I'd just do the seal...but it could be that the excessive play in the shaft is the whole root of the problem...
-Matt
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