Sounds like a good list.
May I add that a failing crank position sensor often acts up when it gets hot. That would actually have been my first guess. Rather common, especially if the cable sheath down by the sensor gets damaged, chafes against the pipes, or is crispy. That unfortunately doesn't set a diagnostic code unless the sensor signal is totally severed. It would at least be a little less expensive to deal with than some of the other possibilities mentioned.
I'd also add a cracked distributor cap or bad ignition wire to the list, although I'm guessing those might misbehave just as badly when cold as warm.
There may also be a concurrent problem at idle such that when the engine is fully warmed, the idle air control valve operates in a zone where the piston is sticky (from wear or dirt). A dirt throttle body throat/plate or misadjusted throttle body wouldn't help that situation (but you shouldn't need to touch throttle adjustments unless you've previously been tinkering in that area). That could account for the bad warm idle.
If a cylinder is missing (where would it go?) then that would be very indicative. Generally, a single fouled or misfiring plug would be worse cold rather than hot, so I actually wouldn't expect you to see much variation based on your symptoms. However, if you do find one or two plug tips that are fouled or significantly darker or lighter than the rest then that pretty much narrows the problem down to either a) the ignition circuit from its distributor contact (including a cracked cap) to the plug tip (like a bad plug wire, very poorly gapped plug or even a bad plug), b) to a fouled injector (run the OBD diagnostic as per the FAQ to exercise it and/or use an injector cleaner additive), c) to blowby in that cylinder or d) a valve problem.
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Dave -940's, prev 740/240/140/120 Never overestimate what little I know.
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